{"id":15,"date":"2017-03-02T12:35:10","date_gmt":"2017-03-02T17:35:10","guid":{"rendered":"https:\/\/web.uri.edu\/nanobiolab\/?page_id=15"},"modified":"2026-01-28T10:36:40","modified_gmt":"2026-01-28T15:36:40","slug":"publications","status":"publish","type":"page","link":"https:\/\/web.uri.edu\/nanobiolab\/publications\/","title":{"rendered":"Publications and Patents"},"content":{"rendered":"\n<p><span style=\"text-decoration: underline\">Peer-reviewed publications<\/span><\/p>\n\n\n\n<p>Articles with URI affiliation<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Nadeem, A.; Lyons, S.; Kindopp, A.; Jamieson, A.; Roxbury, D. &#8220;Machine Learning-Assisted Near-Infrared Spectral Fingerprinting for Macrophage Phenotyping&#8221; <em>ACS Nano<\/em>\u00a0<strong>2024<\/strong>, 18, 34, 22874.<\/li>\n\n\n\n<li>Nadeem, A.*; Kindopp, A.*; Wyllie, I.; Hubert, L.; Joubert, J.; Lucente, S.; Randall, E.; Jena, P.V.; Roxbury, D. &#8220;Enhancing Intracellular Optical Performance and Stability of Engineered Nanomaterials via Aqueous Two-Phase Purification&#8221; <em>Nano Lett.<\/em>\u00a0<strong>2023<\/strong>, 23, 14, 6588. (* designates co-first)<\/li>\n\n\n\n<li>Roger, L.; Lewinski, N.; Putnam, H.; Roxbury, D.; Tresguerres, M.; Wangpraseurt, D. &#8220;Nanobiotech engineering for future coral reefs&#8221; <em>One Earth<\/em>\u00a0<strong>2023<\/strong>, 6, 778.\u00a0<\/li>\n\n\n\n<li>Roger, L.; Lewinski, N.; Putnam, H.; Chen, S.; Roxbury, D.; Tresguerres, M.; Wangpraseurt, D. &#8220;Nanotechnology for coral reef conservation, restoration and rehabilitation&#8221;\u00a0<em>Nature Nanotechnology<\/em> <strong>2023<\/strong>, 18, 831.<\/li>\n\n\n\n<li>Gravely, M.; Kindopp, A.; Hubert, L.; Card, M.; Nadeem, A.; Miller, C.; Roxbury, D. &#8220;Aggregation Reduces Subcellular Localization and Cytotoxicity of Single-Walled Carbon Nanotubes&#8221;\u00a0<em>ACS Appl. Mat. Int.<\/em>\u00a0<strong>2022<\/strong>, 14, 17, 19168.<\/li>\n\n\n\n<li>Jena, P.V.; Gravely, M.; Cupo, C.; Safaee, M.M.; Roxbury, D.*; Heller, D.A.* &#8220;Hyperspectral Counting of Multiplexed Nanoparticle Emitters in Single Cells and Organelles&#8221;\u00a0<em>ACS Nano<\/em>\u00a0<strong>2022<\/strong>, 16, 2, 3092. (* co-corresponding author)<\/li>\n\n\n\n<li>Langenbacher, R.; Budhathoki-Uprety, J.; Jena, P.V.; Roxbury, D.; Streit, J.; Zheng, M.; Heller, D.A. \u201cSingle-Chirality Near-Infrared Carbon Nanotube Sub-Cellular Imaging and FRET Probes\u201d <em>Nano Lett.<\/em> <strong>2021<\/strong>,\u00a021, 15, 6441.<\/li>\n\n\n\n<li>Gravely, M.; Roxbury, D. \u201cMultispectral Fingerprinting Resolves Dynamics of Nanomaterial Trafficking in Primary Endothelial Cells\u201d <em>ACS Nano<\/em> <strong>2021<\/strong>, 15, 7, 12388.<\/li>\n\n\n\n<li>Card, M.; Gravely, M.; Madani, S.Z.M.; Roxbury, D. \u201cA Spin-Coated Hydrogel Platform Enables Accurate Investigation of Immobilized Individual Single-Walled Carbon Nanotubes\u201d <em>ACS Appl. Mater. Int.<\/em> <strong>2021<\/strong>, 13, 27, 31986.<\/li>\n\n\n\n<li>Safaee, M.M.; Gravely, M.; Roxbury, D. &#8220;A Wearable Optical Microfibrous Biomaterial with Encapsulated Nanosensors Enables Wireless Monitoring of Oxidative Stress&#8221; <i>Adv. Funct. Mater. <\/i><b>2021<\/b>, 31, 13, 2006254.<span class=\"Apple-converted-space\">\u00a0<\/span><\/li>\n\n\n\n<li>Madani, S.Z.M.; Safaee, M.M.; Gravely, M.; Silva, C.; Kennedy, S.M.; Bothun, G.D.; Roxbury, D. \u201cCarbon Nanotube\u2013Liposome Complexes in Hydrogels for Controlled Drug Delivery via Near-Infrared Laser Stimulation\u201d <em>ACS Appl. Nano Mater<\/em>. <strong>2021<\/strong>, 4, 1, 331.<\/li>\n\n\n\n<li>Heller, D.A.; Jena, P.V.; Pasquali, M.; Kostarelos, K.; Delogu, L.G.; Meidl, R.E.; Rotkin, S.V.; Scheinberg, D.A.; Schwartz, R.E.; Terrones, M.; Wang, Y.; Bianco, A.; Boghossian, A.A.; Cambre, S.; Cognet, L&#8230;.Roxbury, D. et al. &#8220;Banning carbon nanotubes would be scientifically unjustified and damaging to innovation&#8221;\u00a0<em>Nature Nanotechnology<\/em>,\u00a0<strong>2020<\/strong>, 15, 164.<\/li>\n\n\n\n<li>Madani, S. Zahra M.; Reisch, A.; Roxbury, D., Kennedy, S.M. &#8220;A Magnetically Responsive Hydrogel System for Controlling the Timing of Bone Progenitor Recruitment and Differentiation Factor Deliveries\u201d <i>ACS Biomater. Sci. Eng. <\/i><b>2020<\/b>, 6, 3, 1522.<span class=\"Apple-converted-space\">\u00a0<\/span><\/li>\n\n\n\n<li>Gravely, M.; Safaee, M.M.; Roxbury, D. &#8220;Biomolecular Functionalization of a Nanomaterial to Control Stability and Retention within Live Cells\u201d <i>Nano Lett. <\/i><b>2019<\/b>, 19, 9, 6203.<span class=\"Apple-converted-space\">\u00a0<\/span><\/li>\n\n\n\n<li>Safaee, M.M.; Gravely, M.; Lamothe, A.; McSweeney, M.; Roxbury, D. &#8220;Enhancing the Thermal Stability of Carbon Nanomaterials with DNA\u201d <i>Sci. Rep. <\/i><b>2019<\/b>, 9, 11926.<span class=\"Apple-converted-space\">\u00a0<\/span><\/li>\n\n\n\n<li>Safaee, M.M.; Gravely, M.; Rocchio, C.; Simmeth, M.; Roxbury, D. &#8220;DNA Sequence Mediates Apparent Length Distribution in Single-Walled Carbon Nanotubes\u201d <i>ACS Appl. Mater. Int. <\/i><b>2019<\/b>, 11, 2, 2225.<span class=\"Apple-converted-space\">\u00a0<\/span><\/li>\n\n\n\n<li>Galassi, T.V.; Jena, P.V.; Shah, J.; Ao, G.; Molitor, E.; Bram, Y.; Frankel, A.; Park, J.; Jessurun, J.; Ory, D.S.; Haimovitz-Friedman, A.; Roxbury, D.; Mittal, J.; Zheng, M.; Schwartz, R.E.; Heller, D.A. \u201cAn optical nanoreporter of endolysosomal lipid accumulation reveals enduring effects of diet on hepatic macrophages in vivo\u201d <i>Science Transl. Med. <\/i><b>2018<\/b>, 10, 461.<span class=\"Apple-converted-space\">\u00a0<\/span><\/li>\n\n\n\n<li>Shamay, Y.; Shah, J.; I\u015f\u0131k, M.; Mizrachi, A.; Leibold, J.; Tschaharganeh, D.F.; Budhathoki-Uprety, J.; Nawaly, K.; Sugarman, J.L.; Baut, E.; Neiman, M.R.; Dacek, M.; Ganesh, K.S.; Johnson, D.C.; Sridharan, R.; Chu, K.L.; Rajasekhar, V.K.; Roxbury, D.; Lowe, S.W.; Chodera, J.D.; Heller, D.A. \u201cQuantitative Self Assembly Prediction Yields Targeted Nanomedicines\u201d <i>Nature Materials <\/i><b>2018, <\/b>17, 4, 361.<span class=\"Apple-converted-space\">\u00a0<\/span><\/li>\n\n\n\n<li>Jena, P.V.*; Roxbury, D.*; Galassi, T.V.*; Akkari, L.; Horoszko, C.P.; Iaea, D.B.; Budhathoki-Uprety, J.; Pipalia, N.; Haka, A.S.; Harvey, J.D.; Mittal, J.; Maxfield, F.R.; Joyce, J.A.; Heller, D.A. &#8220;A Carbon Nanotube Optical Reporter Maps Endolysosomal Lipid Flux&#8221;\u00a0<em>ACS Nano<\/em>\u00a0<strong>2017,\u00a0<\/strong>11, 11, 10689. (* designates co-first)<\/li>\n\n\n\n<li>Jena, P.V.; Safaee, M.M.; Heller, D.A.; Roxbury, D. &#8220;DNA\u2013Carbon Nanotube Complexation Affinity and Photoluminescence Modulation Are Independent&#8221; <em>ACS Appl. Mater. Int.\u00a0<\/em><strong>2017<\/strong> 9, 25, 21397.<\/li>\n\n\n\n<li>Budhathoki-Uprety, J.; Langenbacher, R.E.; Jena, P.V.; Roxbury, D.; Heller, D.A. &#8220;A Carbon Nanotube Optical Sensor Reports Nuclear Entry via a Non-Canonical Pathway &#8221;\u00a0<em>ACS Nano<\/em>\u00a0<strong>2017, <\/strong>11, 4, 3875.<\/li>\n\n\n\n<li>Harvey, J.D.; Jena, P.V.; Baker, H.A.; Zerze, G.H.; Williams, R.M.; Galassi, T.V.;\u00a0Roxbury, D.; Mittal, J.; Heller, D.A. \u201cA Carbon Nanotube Reporter of miRNA Hybridization Events In Vivo\u201d\u00a0<em>Nature Biomed. Eng.<\/em> <strong>2017<\/strong>, 1, 0041.<\/li>\n\n\n\n<li>Galassi, T.V.; Jena, P.V.; Roxbury, D.; Heller, D.A. \u201cSingle Nanotube Spectral Imaging To Determine Molar Concentrations of Isolated Carbon Nanotube Species\u201d\u00a0<em>\u00a0Anal. Chem<\/em>. <strong>2017<\/strong>, <em>89<\/em>, 2, 1073.<\/li>\n\n\n\n<li>Jena, P.V.; Galassi, T.V.; Roxbury, D.; Heller, D.A. \u201cReview\u2014Progress toward Applications of Carbon Nanotube Photoluminescence\u201d\u00a0<em>ECS J. Solid State Sci.\u00a0Technol.\u00a0<\/em><strong>2017<\/strong>,\u00a0<em>6<\/em>, 6, M3075.<\/li>\n<\/ul>\n\n\n\n<p>Articles with previous affiliations<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Roxbury, D.; Jena, P.V.; Shamay, Y.; Horoszko, C.P.; Heller, D.A. \u201cCell Membrane Proteins Modulate the Carbon Nanotube Optical Bandgap <em>via<\/em> Surface Charge Accumulation\u201d <em>ACS Nano<\/em> <strong>2016<\/strong>, <em>10<\/em>, 1, 499.<\/li>\n\n\n\n<li>Jena, P.V.; Shamay, Y.; Shah, J.; Roxbury, D.; Paknejad, N.; Heller, D.A. \u201cCarbon Nanotube Fluorescence Resolves the Permeability of Multicellular Tumor Spheroids\u201d <em>Carbon<\/em> <strong>2016<\/strong>, <em>97<\/em>, 99.<\/li>\n\n\n\n<li>Roxbury, D.*; Jena, P.V.*; Williams, R.M.; Balazs, E.; Niethammer, P.; Marcet, S.; Verhaegen, M.; Blais-Ouellette, S.; Heller, D.A. \u201cHyperspectral Microscopy of Near-Infrared Fluorescence Enables 17-Chirality Carbon Nanotube Imaging\u201d <em>Sci.<\/em>\u00a0<em>Rep.<\/em> <strong>2015<\/strong>, 5, 14167. (* designates co-first)<\/li>\n\n\n\n<li>Budhathoki-Uprety, J.; Jena, P.V.; Roxbury, D.; Heller, D.A. \u201cHelical Polycarbodiimide Cloaking of Carbon Nanotubes Enables Inter-Nanotube Energy Transfer Modulation\u201d <em>J. Am. Chem. Soc. <\/em><strong>2014<\/strong>, <em>136<\/em>, 44, 15545.<\/li>\n\n\n\n<li>Roxbury, D.; Mittal, J.; DeGrado, W.; Jagota, A. &#8220;Structural Stability and Binding Strength of a Designed Peptide-Carbon Nanotube Hybrid&#8221; <em>J.<\/em>\u00a0<em>Phys. Chem. C <\/em><strong>2013<\/strong>, <em>177<\/em>, 49, 26255.<\/li>\n\n\n\n<li>Roxbury, D.; Jagota, A.; Mittal, J. &#8220;Simulated Structural Characteristics of Oligomeric DNA Strands Adsorbed onto Single-Walled Carbon Nanotubes&#8221; <em>J<\/em>. <em>Phys.<\/em>\u00a0<em>Chem. B <\/em><strong>2013<\/strong>, <em>117<\/em>, 1, 132.<\/li>\n\n\n\n<li>Bhattacharya, S.; Roxbury, D.; Gong, X.; Mukhopadhyay, D.; Jagota, A. \u201cDNA Conjugated SWCNTs Enter Cells via Rac1 Mediated Macropinocytosis\u201d <em>Nano Lett. <\/em><strong>2012<\/strong>, <em>12<\/em>, 4, 1826.<\/li>\n\n\n\n<li>Roxbury, D.; Mittal, J.; Jagota, A. \u201cMolecular-Basis of Single-Walled Carbon Nanotube Recognition by Single-Stranded DNA\u201d <em>Nano Lett. <\/em><strong>2012<\/strong>, <em>12<\/em>, 3, 1464.<\/li>\n\n\n\n<li>Roxbury, D.; Jagota, A.; Mittal, J. \u201cSequence Specific Self-Stitching Motif of Short Single-Stranded DNA on a Single-Walled Carbon Nanotube\u201d <em>J.<\/em>\u00a0<em>Am. Chem. Soc. <\/em><strong>2011<\/strong>, <em>133<\/em>, 13545.<\/li>\n\n\n\n<li>Roxbury, D.; Tu, X.; Zheng, M.; Jagota, A. \u201cDNA-Carbon Nanotube Recognition Ability Directly Relates to its Binding Strength\u201d <em>Langmuir <\/em><strong>2011<\/strong>, <em>27<\/em>, 13, 8282.<\/li>\n\n\n\n<li>Roxbury, D.; Manohar, S.; Jagota, A. \u201cMolecular Simulation of DNA \u03b2-Sheet and \u03b2-Barrel Structures on Graphite and Carbon Nanotubes\u201d<em> J.<\/em>\u00a0<em>Phys. Chem. C <\/em><strong>2010<\/strong>, <em>114<\/em>, 31, 13267.<\/li>\n<\/ul>\n\n\n\n<p><span style=\"text-decoration: underline\">Patents<\/span><\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Roxbury, D.; Safaee, M.M.; Gravely, M. \u201cA wearable optical microfibrous biomaterial with encapsulated nanosensors for wireless monitoring of chemical analytes\u201d U.S. Provisional Patent Application No. 63\/146,440, Filed 2\/5\/2021<\/li>\n\n\n\n<li>Roxbury, D.; Jena, P.; Heller, D.A. \u201cComposition and Method for Monitoring Lipid\u201d U.S. Patent 10,401,295, Publication Date 9\/3\/2019<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Peer-reviewed publications Articles with URI affiliation Articles with previous affiliations Patents<\/p>\n","protected":false},"author":1325,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-15","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/web.uri.edu\/nanobiolab\/wp-json\/wp\/v2\/pages\/15","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/web.uri.edu\/nanobiolab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/web.uri.edu\/nanobiolab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/web.uri.edu\/nanobiolab\/wp-json\/wp\/v2\/users\/1325"}],"replies":[{"embeddable":true,"href":"https:\/\/web.uri.edu\/nanobiolab\/wp-json\/wp\/v2\/comments?post=15"}],"version-history":[{"count":5,"href":"https:\/\/web.uri.edu\/nanobiolab\/wp-json\/wp\/v2\/pages\/15\/revisions"}],"predecessor-version":[{"id":1885,"href":"https:\/\/web.uri.edu\/nanobiolab\/wp-json\/wp\/v2\/pages\/15\/revisions\/1885"}],"wp:attachment":[{"href":"https:\/\/web.uri.edu\/nanobiolab\/wp-json\/wp\/v2\/media?parent=15"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}