{"id":29218,"date":"2021-07-12T15:37:26","date_gmt":"2021-07-12T19:37:26","guid":{"rendered":"https:\/\/web.uri.edu\/riinbre\/?page_id=29218"},"modified":"2025-07-20T13:33:00","modified_gmt":"2025-07-20T17:33:00","slug":"mic","status":"publish","type":"page","link":"https:\/\/web.uri.edu\/riinbre\/mic\/","title":{"rendered":"Rhode Island INBRE Molecular Informatics Core (MIC)"},"content":{"rendered":"<section class=\"cl-wrapper cl-menu-wrapper\"><nav id=\"\" class=\"cl-menu  \" data-name=\"MIC\" data-show-title=\"0\"><ul id=\"menu-mic\" class=\"cl-menu-list cl-menu-list-no-js\"><li id=\"menu-item-29762\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-29762\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/\">Rhode Island INBRE Molecular Informatics Core (MIC)<\/a><\/li>\n<li id=\"menu-item-30145\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30145\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/\">Services and Resources<\/a><\/li>\n<li id=\"menu-item-30154\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30154\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-data-policies\/\">Data Sharing Policies<\/a><\/li>\n<li id=\"menu-item-30369\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30369\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-nih-strides-initiative\/\">NIH STRIDES Initiative<\/a><\/li>\n<li id=\"menu-item-30494\" class=\"menu-item menu-item-type-post_type menu-item-object-post menu-item-30494\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic-consult\/\">Consultation Request Form<\/a><\/li>\n<\/ul><\/nav><\/section>\n<section class=\"cl-wrapper cl-hero-wrapper\"><div class=\"cl-hero super   cl-has-accessibility-controls\"><div class=\"cl-hero-proper\"><div class=\"overlay\"><div class=\"block\"><h1>Welcome to the Rhode Island INBRE Molecular Informatics Core<\/h1><p>An NIH Data Sciences Core for Biomedical Research<\/p><a class=\"cl-button\" href=\"https:\/\/web.uri.edu\/riinbre\/who-we-are\" title=\"\">Who We Are<\/a><\/div><\/div><div class=\"still\" style=\"background-image:url(https:\/\/web.uri.edu\/wp-https:\/\/web.uri.edu\/riinbre\/wp-content\/uploads\/sites\/1497\/Molecular-Informatics-Core-Logo-labels-blue.jpg);\"><\/div><div class=\"cl-accessibility-controls-container\"><div class=\"cl-accessibility-controls\"><div class=\"cl-accessibility-icon\" title=\"Accessibility controls\">Accessibility controls<\/div><div class=\"cl-accessibility-control cl-accessibility-motion-control cl-accessibility-control-hidden\"><div class=\"cl-accessibility-control-default\"><div class=\"cl-accessibility-control-button\" title=\"Pause motion\">Pause motion<\/div><div class=\"cl-accessibility-control-label\">Motion: <span class=\"cl-accessibility-syntax\">On<\/span><\/div><\/div><div class=\"cl-accessibility-control-alternate\"><div class=\"cl-accessibility-control-button\" title=\"Play motion\">Play motion<\/div><div class=\"cl-accessibility-control-label\">Motion: <span class=\"cl-accessibility-syntax\">Off<\/span><\/div><\/div><\/div><div class=\"cl-accessibility-control cl-accessibility-contrast-control\"><div class=\"cl-accessibility-control-default\"><div class=\"cl-accessibility-control-button\" title=\"Increase text contrast\">Increase text contrast<\/div><div class=\"cl-accessibility-control-label\">Contrast: <span class=\"cl-accessibility-syntax\">Standard<\/span><\/div><\/div><div class=\"cl-accessibility-control-alternate\"><div class=\"cl-accessibility-control-button\" title=\"Reset text contrast\">Reset text contrast<\/div><div class=\"cl-accessibility-control-label\">Contrast: <span class=\"cl-accessibility-syntax\">High<\/span><\/div><\/div><\/div><div class=\"cl-accessibility-system-setting\"><div class=\"cl-accessibility-toggle\" title=\"Apply my preferences site-wide\"><\/div><div class=\"cl-accessibility-toggle-label\">Apply site-wide<\/div><\/div><\/div><\/div><\/div><\/div><\/section>\n<p>Welcome to the Rhode Island INBRE Molecular Informatics Core (formerly the RI-INBRE Bioinformatics Core and URI Genomics and Sequence Core).&nbsp; We are an NIH-funded core facility that serves Rhode Island institutions requiring sequencing, bioinformatics or data science services.<\/p>\n<h1>Events and Announcements<\/h1>\n<p><ul class=\"display-posts-listing\"><section class=\"cl-wrapper cl-panel-wrapper\"><div class=\"cl-panel  \"><figure><img decoding=\"async\" src=\"https:\/\/web.uri.edu\/riinbre\/wp-content\/uploads\/sites\/1497\/NIH_Master_Logo_Vertical_2Color.jpg\" srcset=\"\" alt=\"Supporting Fairness and Originality in NIH Research Applications\"><\/figure><article><h1>Supporting Fairness and Originality in NIH Research Applications<\/h1><p>To combat the increasing number of grant applications generated by AI, NIH is implementing the following procedures (summarized below with link to full notice) &#8220;NIH will not consider applications that are either substantially developed by AI, or contain sections substantially developed by AI, to be original ideas of applicants.&#8221; &#8220;NIH will only accept six new, &#091;&hellip;&#093;<p><a class=\"cl-button  \" href=\"https:\/\/web.uri.edu\/riinbre\/supporting-fairness-and-originality-in-nih-research-applications\/\" title=\"\">Read More<\/a><\/p><\/p><\/article><\/div><\/section><\/ul><br \/>\n<ul class=\"display-posts-listing\"><section class=\"cl-wrapper cl-panel-wrapper\"><div class=\"cl-panel  \"><figure><img decoding=\"async\" src=\"https:\/\/web.uri.edu\/riinbre\/wp-content\/uploads\/sites\/1497\/NIH_Master_Logo_Vertical_2Color.jpg\" srcset=\"\" alt=\"LongRead Assembly pipeline (LoRA)\"><\/figure><article><h1>NIH Nephele: Microbiome Analysis: LongRead Assembly pipeline (LoRA)<\/h1><p>The LoRA pipeline is a complete automated workflow for long metagenomic reads processing, which runs through steps for host removal, long read assembly, microbial taxonomic content classifications, feature predictions, annotations, and abundance scoring, as well as (if elected) functional inference, community stats and visualizations. The pipeline is also equipped with user electable databases specific for &#091;&hellip;&#093;<p><a class=\"cl-button  \" href=\"https:\/\/web.uri.edu\/riinbre\/longread-assembly-pipeline-lora\/\" title=\"\">Read More<\/a><\/p><\/p><\/article><\/div><\/section><\/ul><br \/>\n<ul class=\"display-posts-listing\"><section class=\"cl-wrapper cl-panel-wrapper\"><div class=\"cl-panel  \"><figure><img decoding=\"async\" src=\"https:\/\/web.uri.edu\/riinbre\/wp-content\/uploads\/sites\/1497\/All-of-Us-logo-square_edited-1.jpg\" srcset=\"\" alt=\"Release of Curated Data Repository v8 to the All of Us Researcher Workbench \"><\/figure><article><h1>Release of Curated Data Repository v8 to the All of Us Researcher Workbench<\/h1><p>Release of Curated Data Repository v8 to the&nbsp;All of Us&nbsp;Researcher Workbench&nbsp; The&nbsp;All of Us&nbsp;Research Program released the Curated Data Repository (CDR) version 8 for Controlled Tier and Registered Tier data. The CDRv8 for both tiers (Controlled Tier C2024Q3R4 and Registered Tier R2024Q3R3) includes participant data with a&nbsp;cutoff date&nbsp;of October 1, 2023. Link<p><a class=\"cl-button  \" href=\"https:\/\/web.uri.edu\/riinbre\/release-of-curated-data-repository-v8-to-the-all-of-us-researcher-workbench\/\" title=\"\">Read More<\/a><\/p><\/p><\/article><\/div><\/section><\/ul><br \/>\n<ul class=\"display-posts-listing\"><section class=\"cl-wrapper cl-panel-wrapper\"><div class=\"cl-panel  \"><figure><img decoding=\"async\" src=\"https:\/\/web.uri.edu\/riinbre\/wp-content\/uploads\/sites\/1497\/IntegratedGraphic_Concept-no-title-500x500-1.jpg\" srcset=\"\" alt=\"HHS Artificial Intelligence Strategic Plan\"><\/figure><article><h1>HHS Artificial Intelligence Strategic Plan<\/h1><p>HHS\u2019s vision is to be a global leader in innovating and adopting responsible AI to achieve unparalleled advances in the health and well-being of all Americans. HHS\u2019s overarching objective is to set in motion a coordinated public-private approach to improving the quality, safety, efficiency, accessibility, equitability, and outcomes in health and human services through the &#091;&hellip;&#093;<p><a class=\"cl-button  \" href=\"https:\/\/web.uri.edu\/riinbre\/hhs-artificial-intelligence-strategic-plan\/\" title=\"\">Read More<\/a><\/p><\/p><\/article><\/div><\/section><\/ul><br \/>\n<ul class=\"display-posts-listing\"><section class=\"cl-wrapper cl-panel-wrapper\"><div class=\"cl-panel  \"><figure><img decoding=\"async\" src=\"https:\/\/web.uri.edu\/riinbre\/wp-content\/uploads\/sites\/1497\/IntegratedGraphic_Concept-no-title-500x500-1.jpg\" srcset=\"\" alt=\"NIH Strategic Plan for Data Science, 2025 \u2013 2030\"><\/figure><article><h1>NIH Strategic Plan for Data Science, 2025 \u2013 2030<\/h1><p>Data science is advancing our understanding of biomedical and behavioral phenomena, contributing to breakthroughs that improve the health and wellbeing of all. The 2025-2030 National Institutes of Health (NIH) Strategic Plan for Data Science sets a bold vision for the future of data science at the NIH. The Office of Data Science Strategy leads implementation &#091;&hellip;&#093;<p><a class=\"cl-button  \" href=\"https:\/\/web.uri.edu\/riinbre\/nih-strategic-plan-for-data-science-2025-2030\/\" title=\"\">Read More<\/a><\/p><\/p><\/article><\/div><\/section><\/ul><br \/>\n<ul class=\"display-posts-listing\"><section class=\"cl-wrapper cl-panel-wrapper\"><div class=\"cl-panel  \"><figure><img decoding=\"async\" src=\"https:\/\/web.uri.edu\/riinbre\/wp-content\/uploads\/sites\/1497\/fraud-rubber-stamp-vector-12353305.jpg\" srcset=\"\" alt=\"Science journals to use AI to detect image fraud\"><\/figure><article><h1>Science Journals to Investigate Image Fraud with AI Tools<\/h1><p>The journal Science announced on Jan 4, 2024 that they will begin using the tool Proofig to identify instances of image fraud in publications submitted to its six journals. The policy is summarized as follows: Proofig will be applied after a research paper is revised by authors. After analyzing the images, the tool generates a &#091;&hellip;&#093;<p><a class=\"cl-button  \" href=\"https:\/\/web.uri.edu\/riinbre\/science-journals-to-investigate-image-fraud-with-ai-tools\/\" title=\"\">Read More<\/a><\/p><\/p><\/article><\/div><\/section><\/ul><br \/>\n<ul class=\"display-posts-listing\"><section class=\"cl-wrapper cl-panel-wrapper\"><div class=\"cl-panel  \"><figure><img decoding=\"async\" src=\"https:\/\/web.uri.edu\/riinbre\/wp-content\/uploads\/sites\/1497\/20180723-cit-scaled-1.jpg\" srcset=\"\" alt=\"NIGMS Launches NIGMS Sandbox, a set of Cloud-Based Training Modules in Biomedical Data Science\"><\/figure><article><h1>NIGMS Cloud Sandbox<\/h1><p>The NIGMS has recently launched a cloud-based set of learning modules called NIGMS Sandbox. These modules are designed to teach basic and advanced concepts in biomedical data science. The modules currently run on the Google Cloud Platform (GCP) but will eventually run on Amazon Web Service (AWS) and Microsoft Azure as well. The modules currently &#091;&hellip;&#093;<p><a class=\"cl-button  \" href=\"https:\/\/web.uri.edu\/riinbre\/nigms-cloud-sandbox\/\" title=\"\">Read More<\/a><\/p><\/p><\/article><\/div><\/section><\/ul><\/p>\n<p><a href=\"https:\/\/coremarketplace.org\/RRID:SCR_017685\" target=\"_blank\" rel=\"noopener\">Visit us the the Core Marketplace<\/a><\/p>\n<h6><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-full wp-image-16954\" src=\"https:\/\/web.uri.edu\/wp-content\/uploads\/sites\/1497\/CoresRI_WebButton_250x123px.png\" alt=\"\" width=\"226\" height=\"111\"><\/h6>\n","protected":false},"excerpt":{"rendered":"<p>Welcome to the Rhode Island INBRE Molecular Informatics Core (formerly the RI-INBRE Bioinformatics Core and URI Genomics and Sequence Core).&nbsp; We are an NIH-funded core facility that serves Rhode Island institutions requiring sequencing, bioinformatics or data science services. Events and Announcements Visit us the the Core Marketplace<\/p>\n","protected":false},"author":3192,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-29218","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages\/29218","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/users\/3192"}],"replies":[{"embeddable":true,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/comments?post=29218"}],"version-history":[{"count":6,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages\/29218\/revisions"}],"predecessor-version":[{"id":37655,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages\/29218\/revisions\/37655"}],"wp:attachment":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/media?parent=29218"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}