{"id":29454,"date":"2021-07-28T17:15:08","date_gmt":"2021-07-28T21:15:08","guid":{"rendered":"https:\/\/web.uri.edu\/riinbre\/?page_id=29454"},"modified":"2023-11-20T13:50:11","modified_gmt":"2023-11-20T18:50:11","slug":"mic-bioinformatics-and-data-science","status":"publish","type":"page","link":"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/mic-bioinformatics-and-data-science\/","title":{"rendered":"MIC Bioinformatics and Data Science"},"content":{"rendered":"<section class=\"cl-wrapper cl-menu-wrapper\"><nav id=\"\" class=\"cl-menu  \" data-name=\"MIC-Services\" data-show-title=\"0\"><ul id=\"menu-mic-services\" class=\"cl-menu-list cl-menu-list-no-js\"><li id=\"menu-item-30150\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30150\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/\">Rhode Island INBRE Molecular Informatics Core (MIC)<\/a><\/li>\n<li id=\"menu-item-30184\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30184\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/mic-bioinformatics-and-data-science\/\">Bioinformatics and Data Science Analysis<\/a><\/li>\n<li id=\"menu-item-30178\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30178\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/mic-sequencing-services\/\">Sequencing<\/a><\/li>\n<li id=\"menu-item-30189\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30189\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/mic-molecular-modeling-services\/\">Molecular Modeling<\/a><\/li>\n<li id=\"menu-item-30183\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30183\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/mic-vr\/\">Virtual\/Augmented Reality &amp; 3D Printing<\/a><\/li>\n<\/ul><\/nav><\/section>\n<section class=\"cl-wrapper cl-panel-wrapper mceNonEditable cl-panel-noneditable\" data-shortcode=\"%5Bcl-panel%20title%3D%22Bioinformatics%20and%20Data%20Science%20at%20the%20MIC%22%20alt%3D%22Bioinformatics%20and%20Data%20Science%20at%20the%20MIC%22%20reverse%3D%22true%22%20format%3D%22super%22%20img%3D%22https%3A%2F%2Fweb.uri.edu%2Friinbre%2Ffiles%2Ftest.png%22%5DAt%20the%20MIC%2C%20we%20provide%20a%20variety%20of%20bioinformatics%20and%20data%20science%20services.%5B%2Fcl-panel%5D\">\n<div class=\"cl-panel-super reverse \">\n<div class=\"cl-panel-super-blur\" style=\"background-image: url('https:\/\/web.uri.edu\/wp-content\/uploads\/sites\/1497\/test.png')\">&nbsp;<\/div>\n<div class=\"cl-panel-super-content\">\n<div class=\"cl-panel-super-image\"><img decoding=\"async\" src=\"https:\/\/web.uri.edu\/wp-content\/uploads\/sites\/1497\/test.png\" alt=\"Bioinformatics and Data Science at the MIC\"><\/div>\n<div class=\"cl-panel-super-text\">\n<h1>Bioinformatics and Data Science at the MIC<\/h1>\n<p>At the MIC, we provide a variety of bioinformatics and data science services. Our goal is to provide a complete pipeline from sequencing to data processing to analysis to meet the needs of our users. We can analysis most NGS datasets as well as proteomics and metabolomics datasets generated elsewhere, and can also help with experimental design, statistical analysis, and other data science tasks.<\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/section>\n<hr>\n<p>Over the past decade, data science needs in the biomedical and environmental sciences have grown exponentially. While bioinformatics remains a key service of our core, we also strive to meet the broader data science initiatives of NIH, NSF and other agencies, including the Data Science Core for Biomedical Research mandate of the NIH IDeA program. With sequencing services now available, our goal is to provide a unified genomics pipeline from experimental design to sample prep to sequencing to bioinformatics that will serve the needs of users of all experience levels. We also want to provide a unified experience for users of the <a href=\"https:\/\/web.uri.edu\/riinbre\/core-facility\/\" target=\"_blank\" rel=\"noopener\">RI-INBRE Centralized Research Core Facility<\/a> that will provide complete start-to-finish data generation and analysis pipelines for selected methods. We can also analyze proteomics, metabolomics and lipiomics and other omics datasets. We support the <a href=\"https:\/\/web.uri.edu\/riinbre\/rhode-island-inbre-molecular-informatics-core-mic\/mic-nih-strides-initiative\/\">NIH STRIDES initiative<\/a> to promote cloud computing in IDeA states. Training in bioinformatics and data science topics is available to students and researchers.<\/p>\n<hr>\n<div class=\"cl-tiles thirds\"><div class=\"cl-wrapper cl-card-wrapper\"><a class=\"cl-card   left\" href=\"https:\/\/web.uri.edu\/riinbre\/?page_id=30623&amp;preview=true\" title=\"\"><div class=\"cl-card-container media\"><img decoding=\"async\" src=\"https:\/\/web.uri.edu\/wp-content\/uploads\/sites\/1497\/MiSeq-1000x1000-1.jpg\" srcset=\"\" alt=\"Sequencing Pipelines\"><\/div><div class=\"cl-card-container text\"><div class=\"cl-card-text\"><h2>Sequencing Pipelines<\/h2><p>Pipelines for generating, processing, and depositing sequence data (eg for RNA-seq)<\/p><\/div><\/div><div class=\"cl-card-container button\">Sequencing Pipelines<\/div><\/a><\/div><div class=\"cl-wrapper cl-card-wrapper\"><a class=\"cl-card   left\" href=\"https:\/\/web.uri.edu\/riinbre\/?page_id=30629&amp;preview=true\" title=\"\"><div class=\"cl-card-container media\"><img decoding=\"async\" src=\"https:\/\/web.uri.edu\/wp-content\/uploads\/sites\/1497\/Proteomics.png\" srcset=\"\" alt=\"Omics Data Analysis\"><\/div><div class=\"cl-card-container text\"><div class=\"cl-card-text\"><h2>Omics Data Analysis<\/h2><p>Analysis of omics datasets produced at the MIC or elsewhere.<\/p><\/div><\/div><div class=\"cl-card-container button\">Omics<\/div><\/a><\/div><div class=\"cl-wrapper cl-card-wrapper\"><a class=\"cl-card   left\" href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/mic-bioinformatics-and-data-science\/bpp-mic\/\" title=\"\"><div class=\"cl-card-container media\"><img decoding=\"async\" src=\"https:\/\/web.uri.edu\/wp-content\/uploads\/sites\/1497\/Sequencing.png\" srcset=\"\" alt=\"Bioinformatics Pilot Project\"><\/div><div class=\"cl-card-container text\"><div class=\"cl-card-text\"><h2>Bioinformatics Pilot Project<\/h2><p>Bioinformatics Pilot Projects for primarily undergraduate institutions.<\/p><\/div><\/div><div class=\"cl-card-container button\">BPP<\/div><\/a><\/div><\/div>\n","protected":false},"excerpt":{"rendered":"<p>&nbsp; Bioinformatics and Data Science at the MIC At the MIC, we provide a variety of bioinformatics and data science services. Our goal is to provide a complete pipeline from sequencing to data processing to analysis to meet the needs of our users. We can analysis most NGS datasets as well as proteomics and metabolomics [&hellip;]<\/p>\n","protected":false},"author":3192,"featured_media":0,"parent":29238,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-29454","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages\/29454","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/users\/3192"}],"replies":[{"embeddable":true,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/comments?post=29454"}],"version-history":[{"count":5,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages\/29454\/revisions"}],"predecessor-version":[{"id":35258,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages\/29454\/revisions\/35258"}],"up":[{"embeddable":true,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages\/29238"}],"wp:attachment":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/media?parent=29454"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}