{"id":30623,"date":"2022-01-23T14:12:07","date_gmt":"2022-01-23T19:12:07","guid":{"rendered":"https:\/\/web.uri.edu\/riinbre\/?page_id=30623"},"modified":"2022-08-04T14:49:45","modified_gmt":"2022-08-04T18:49:45","slug":"mic-sequencing-pipelines","status":"publish","type":"page","link":"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/mic-bioinformatics-and-data-science\/mic-sequencing-pipelines\/","title":{"rendered":"MIC Sequencing Pipelines"},"content":{"rendered":"<section class=\"cl-wrapper cl-menu-wrapper\"><nav id=\"\" class=\"cl-menu  \" data-name=\"MIC-Services\" data-show-title=\"0\"><ul id=\"menu-mic-services\" class=\"cl-menu-list cl-menu-list-no-js\"><li id=\"menu-item-30150\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30150\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/\">Rhode Island INBRE Molecular Informatics Core (MIC)<\/a><\/li>\n<li id=\"menu-item-30184\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30184\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/mic-bioinformatics-and-data-science\/\">Bioinformatics and Data Science Analysis<\/a><\/li>\n<li id=\"menu-item-30178\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30178\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/mic-sequencing-services\/\">Sequencing<\/a><\/li>\n<li id=\"menu-item-30189\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30189\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/mic-molecular-modeling-services\/\">Molecular Modeling<\/a><\/li>\n<li id=\"menu-item-30183\" class=\"menu-item menu-item-type-post_type menu-item-object-page menu-item-30183\"><a href=\"https:\/\/web.uri.edu\/riinbre\/mic\/mic-services-and-resources\/mic-vr\/\">Virtual\/Augmented Reality &amp; 3D Printing<\/a><\/li>\n<\/ul><\/nav><\/section>\n<h1>Sequencing Pipelines<\/h1>\n<p>With the acquisition of sequencing capacity to the core, we now have the ability to provide start-to-finish genomics services including:<\/p>\n<ul>\n<li>Experimental design consultation<\/li>\n<li>Library prep<\/li>\n<li>Sequencing<\/li>\n<li>Bioinformatics analysis and data visualization<\/li>\n<li>Data sharing and public access compliance<\/li>\n<li>Assistance in manuscript preparation<\/li>\n<\/ul>\n<p>We primarily build our pipelines using <a href=\"https:\/\/snakemake.readthedocs.io\/en\/stable\/\" rel=\"noopener\" target=\"_blank\">Snakemake<\/a> and <a href=\"https:\/\/www.bioconductor.org\/\" rel=\"noopener\" target=\"_blank\">R BioConductor<\/a>.<\/p>\n<p>Please request a <a href=\"https:\/\/web.uri.edu\/riinbre\/mic-consult\/\" target=\"_blank\" rel=\"noopener\">consultation<\/a> to discuss your specific genomics needs.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Sequencing Pipelines With the acquisition of sequencing capacity to the core, we now have the ability to provide start-to-finish genomics services including: Experimental design consultation Library prep Sequencing Bioinformatics analysis and data visualization Data sharing and public access compliance Assistance in manuscript preparation We primarily build our pipelines using Snakemake and R BioConductor. Please request [&hellip;]<\/p>\n","protected":false},"author":3192,"featured_media":0,"parent":29454,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-30623","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages\/30623","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/users\/3192"}],"replies":[{"embeddable":true,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/comments?post=30623"}],"version-history":[{"count":5,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages\/30623\/revisions"}],"predecessor-version":[{"id":32755,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages\/30623\/revisions\/32755"}],"up":[{"embeddable":true,"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/pages\/29454"}],"wp:attachment":[{"href":"https:\/\/web.uri.edu\/riinbre\/wp-json\/wp\/v2\/media?parent=30623"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}