{"id":43,"date":"2016-01-14T23:39:47","date_gmt":"2016-01-14T23:39:47","guid":{"rendered":"http:\/\/www.gso.uri.edu\/rynearson-lab\/?page_id=43"},"modified":"2021-10-14T13:54:49","modified_gmt":"2021-10-14T17:54:49","slug":"publications","status":"publish","type":"page","link":"https:\/\/web.uri.edu\/rynearson-lab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n

For a full list of publications, visit the Rynearson Google Scholar Page<\/a><\/p>\n\n\n\n

* graduate student co-author, ** undergraduate student co-author<\/p>\n\n\n\n

Samuels, T, TA Rynearson, and S Collins (2021) Surviving heatwaves: thermal experience predicts life and death in a Southern Ocean diatom. Frontiers in Marine Science<\/a> 8, 9<\/p>\n\n\n\n

*Anderson SI and TA Rynearson (2020) Variability approaching the thermal limits can drive diatom community dynamics. Limnology and Oceanography<\/a> 65 (9), 1961-1973<\/p>\n\n\n\n

Rynearson, TA, *SA Flickinger, and *DN Fonatine (2020) Metabarcoding reveals temporal patterns of community composition and realized thermal niches of Thalassiosira spp. (bacillariophyceae) from the Narragansett Bay Long-Term Time Series. Biology<\/a> 9 (1), 19<\/p>\n\n\n\n

Rubin, ET, S Cheng, AL Montalbano, S Menden-Deuer, and TA Rynearson (2019) Transcriptomic response to feeding and starvation in a herbivorous dinoflagellate. Frontiers in Marine Science<\/a> 6, 246<\/p>\n\n\n\n

Kang LK and TA Rynearson (2019) Identification and expression analyses of the Nitrate Transporter Gene (NRT2) family among Skeletonema<\/em> species (Baccilariophyceae). Journal of phycology<\/a> 55 (5), 1115-1125<\/p>\n\n\n\n

Rynearson, TA (2017) Navigating in a sea of genes. Science<\/em><\/a> 358, 1129-1130<\/p>\n\n\n\n

*Whittaker KA and TA Rynearson (2017) Evidence for environmental and ecological selection in a microbe with no geographic limits to gene flow. Proceedings of the National Academy of Sciences 114(10): 2651-2656.<\/a><\/em><\/p>\n\n\n\n

A Godhe and TA Rynearson (2017) The role of intraspecific variation in the ecological and evolutionary success of diatoms in changing environments. Phil. Trans. R. Soc. B, Vol 372(1728): 20160399<\/a><\/p>\n\n\n\n

Grear, JS, TA Rynearson, AL Montalbano, B Govenar, S Menden-Deuer (2017) pCO2 effects on species composition and growth of an estuarine phytoplankton community. Estuarine, Coastal and Shelf Science V190:40-49<\/em><\/a>. doi:10.1016\/j.ecss.2017.03.016<\/a><\/p>\n\n\n\n

*Canesi, K and T Rynearson (2016; feature article) Temporal variation of Skeletonema community composition from a long-term time series in Narragansett Bay identified using high-throughput sequencing. Marine Ecology Progress Series, V 556:1-16 ; doi: 10.3354\/meps11843<\/a><\/em><\/p>\n\n\n\n

Chen, G. and T.A. Rynearson (2016) Genetically distinct populations of a diatom coexist during the North Atlantic spring bloom. Limnology and Oceanography,<\/em> V 61:2165-2179,doi: 10.1002\/lno.10361<\/a><\/p>\n\n\n\n

*Bailey, J, E. Durbin, T. Rynearson (2016) Pseudocalanus<\/em> copepods in the Bering Sea: Species identification, intraspecific diversity and biogeography. Deep Sea Research II, V 134:173-180, doi:10.1016\/j.dsr2.2015.04.017<\/a><\/p>\n\n\n\n

*Cleary, A., E. Durbin and T. Rynearson, *J. Bailey (2016) Feeding by Pseudocalanus<\/em> copepods in the Bering Sea: trophic linkages and a potential mechanism of niche partitioning, Deep Sea Research II, V 134:181-189, doi:10.1016\/j.dsr2.2015.04.001<\/a><\/p>\n\n\n\n

Rynearson, T. and Menden-Deuer, S. (2016) Drivers that structure biodiversity in the plankton.  P. M. Glibert and T.M. Kana (eds), Aquatic Microbial Ecology and Biogeochemistry: A dual perspective<\/a>.  Springer.<\/p>\n\n\n\n

Snelgrove, P., E. Vanden Berghe, P. Miloslavich, P. Archambault, N. Bailly, A. Brandt, A. Bucklin, M. Clark, F. Dahdouh-Guebas, P. Halpin, R. Hopcroft, K. Kaschner, B. Lascelles, L.A. Levin, S. Menden-Deuer, A. Metaxas, D. Obura, R. R. Reeves, T. Rynearson, K. Stocks, M. Tarzia, D. Tittensor, V. Tunnicliffe, B. Wallace, R. Wanless, T. Webb, P. Bernal, J. Rice, A. Rosenberg (2016) Chapter 34: Gradients in Marine Biodiversity. In The United Nations World Ocean Assessment<\/em><\/a>, published by the United Nations as part of the Global Reporting and Assessment of the State of the Marine Environment<\/p>\n\n\n\n

Harvey, E.L., S. Menden-Deuer, T. Rynearson (2015) Persistent intra-specific variation in genetic and behavioral traits in the raphidophyte, Heterosigma<\/em> akashiwo<\/em>.  Frontiers in Aquatic Microbiology<\/em> doi:10.3389\/fmicb.2015.01277<\/a><\/p>\n\n\n\n

*Alexander, H, B. Jenkins, T. Rynearson, S. Dyhrman (2015) Metatranscriptome analyses indicate resource partitioning between diatoms in the field. Proceedings of the National Academy of Sciences, doi: 10.1073\/pnas.1421993112<\/a><\/p>\n\n\n\n

Scheinin M., U.Riebesell, T.Rynearson, K. Lohbeck, S. Collins (2015) Experimental Evolution Gone Wild. Journal of the Royal Society, Interface, V 12, 20150056, 10.1098\/rsif.2015.0056<\/a><\/p>\n\n\n\n

Snelgrove, P., E. Vanden Berghe, P. Miloslavich, P. Archambault, N. Bailly, A. Brandt, A. Bucklin, M. Clark, F. Dahdouh-Guebas, R. Danovaro, E. Frere, P. Halpin, R. Hopcroft, K. Kaschner, B. Lascelles, L.A. Levin, S. Menden-Deuer, A. Metaxas, D. Obura, R. O\u2019Dor, R. R. Reeves, T. Rynearson, M. Sato, K. Stocks, M. Tarzia, D. Tittensor, V. Tunnicliffe, B. Wallace, R. Wanless, T. Webb, C-L Wei (2015) Chapter 34: Gradients in Marine Biodiversity.  In The United Nations World Ocean Assessment<\/em>,  published by the United Nations as part of the Global Reporting and Assessment of the State of the Marine Environment<\/p>\n\n\n\n

Collins, S, B. Rost, T. Rynearson (2014) Evolutionary potential of marine phytoplankton under ocean acidification. Evolutionary Applications Vol 7(1) 140-155.  doi:10.1111\/eva.12120<\/a><\/p>\n\n\n\n

Keeling, P.J., Burki, F., Wilcox, H.M., Allam, B., Allen, E.E., Amaral-Zettler, L.A., Armbrust, E.V., Archibald, J.M., Bharti, A.K., Bell, C.J., Beszteri, B., Bidle, K.D., Cameron, C.T., Campbell, L., Caron, D.A., Cattolico, R.A., Collier, J.L., Coyne, K., Davy, S.K., Deschamps, P., Dyhrman, S.T., Edvardsen, B., Gates, R.D., Gobler, C.J., Greenwood, S.J., Guida, S.M., Jacobi, J.L., Jakobsen, K.S., James, E.R., Jenkins, B., John, U., Johnson, M.D., Juhl, A.R., Kamp, A., Katz, L.A., Kiene, R., Kudryavtsev, A., Leander, B.S., Lin, S., Lovejoy, C., Lynn, D., Marchetti, A., McManus, G., Nedelcu, A.M., Menden-Deuer, S., Miceli, C., Mock, T., Montresor, M., Moran, M.A., Murray, S., Nadathur, G., Nagai, S., Ngam, P.B., Palenik, B., Pawlowski, J., Petroni, G., Piganeau, G., Posewitz, M.C., Rengefors, K., Romano, G., Rumpho, M.E., Rynearson, T., Schilling, K.B., Schroeder, D.C., Simpson, A.G.B., Slamovits, C.H., Smith, D.R., Smith, G.J., Smith, S.R., Sosik, H.M., Stief, P., Theriot, E., Twary, S.N., Umale, P.E., Vaulot, D., Wawrik, B., Wheeler, G.L., Wilson, W.H., Xu, Y., Zingone, A., Worden, A.Z., (2014). The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing. PLoS Biol<\/a> <\/a>12 (6), e1001889.<\/a><\/p>\n\n\n\n

Rynearson, T. A., K Richardson, R. S. Lampitt, M. E. Sieracki, A. J. Poulton, *M. M. Lyngsgaard, and M. J. Perry (2013) Major contribution of diatom resting spores to vertical flux in the sub-polar North Atlantic. Deep Sea Res. I Vol 82, 60-71<\/a><\/p>\n\n\n\n

Boyd P.W., T.A. Rynearson, E.A., Armstrong, F-X. Fu, K. Hayashi, Z. Hu, D.A. Hutchins, R.M. Kudela, E. Litchman, M. R. Mulholland, U. Passow, R.F. Strzepek, *K.A. Whittaker, E. Yu and *M.K. Thomas (2013) Marine Phytoplankton Temperature versus Growth Responses from Polar to Tropical Waters \u2013 Outcome of a Scientific Community-Wide Study. PLoS One, Vol. 8 (5), e63091. doi:10.1371\/journal.pone.0063091<\/a><\/p>\n\n\n\n

Duffy, JE, LA Amaral-Zettler, DG Fautin, G Paulay, TA Rynearson, HM Sosik, JJ Stachowicz (2013) Envisioning a National Marine Biodiversity Observation Network.  Bioscience 63 (5), 350-361<\/a><\/p>\n\n\n\n

*Whittaker, KA, **DR Rignanese, RJ Olson, TA Rynearson (2012) Molecular subdivision of the marine diatom Thalassiosira rotula<\/em> and its relationship to differences in geographic distribution, genome size, and physiology. BMC Evolutionary Biology. V12:209, doi:10.1186\/1471-2148-12-209<\/a><\/p>\n\n\n\n

*Alexander, H., Jenkins, B.D., Rynearson, T.A., Saito, M.A., Mercier, M.L.\u202f Dyhrman, S.T., (2012) Identifying reference genes with stable expression from high throughput sequence data. Frontiers in Aquatic Microbiology. doi: 10.3389\/fmicb.2012.00385<\/a><\/p>\n\n\n\n

*Piecuch, C and TA Rynearson (2012) Quantifying dispersal and connectivity of surface waters using observational Lagrangian measurements. Journal of Atmospheric and Oceanic Technology 29, 1127\u20131138. doi: 10.1175\/JTECH-D-11-00172.1<\/a><\/p>\n\n\n\n

*Cleary, AC, EG Durbin, TA Rynearson (2012) Krill feeding on sediment in the Gulf of Maine (North Atlantic). Marine Ecology Progress Series. Vol 455, 157-172. doi: 10.3354\/meps09632<\/a><\/p>\n\n\n\n

^Dyhrman, S., ^B. Jenkins, ^T. Rynearson, ^M. Saito, *M. Mercier, *H. Alexander, *L. Whitney, A. Drzewianowski, V. Bulygin, *E. Bertrand, Z. Wu, C. Benitez-Nelson, and A. Heithoff. (2012) The transcriptome and proteome of the diatom Thalassiosira pseudonana<\/em> reveal a diverse Phosphorus stress response. PLoS One 7:e33768<\/a> ^ Authors contributed equally to the work<\/p>\n\n\n\n

Rynearson, T.A. and B. Palenik. (2011) Learning to read the oceans: Genomics of marine phytoplankton. <\/em>Advances in Marine Biology, Vol 60:1-39<\/a><\/p>\n\n\n\n

*Horn, M. G., R. S. Robinson, T. A. Rynearson, and D. M. Sigman (2011), Nitrogen isotopic relationship between diatom-bound and bulk organic matter of cultured polar diatoms, Paleoceanography, 26, PA3208, doi:10.1029\/2010PA002080<\/a><\/p>\n\n\n\n

*Graff, J and T.A. Rynearson. (2011) Extraction method influences the recovery of phytoplankton pigments from natural assemblages. Limnology and Oceanography: Methods,<\/em> 9:129-139<\/a><\/p>\n\n\n\n

Durbin, E., M. Casas, T.A. Rynearson (2011) Copepod feeding and digestion rates using prey DNA and qPCR. Journal of Plankton Res, doi: 10.1093\/plankt\/fbr082<\/a><\/p>\n\n\n\n

Wu, Z., Jenkins, B. D., Rynearson, T. A., Dyhrman, S. T., Saito, M. A., *Mercier, M. & *Whitney, L.  (2010) Empirical Bayes Analysis of Sequencing-based Transcriptional Profiling Without Replicates. BMC Bioinformatics. 11(1): 564<\/a><\/p>\n\n\n\n

Rynearson, T.A., E.O. Lin and E.V. Armbrust. (2009) Metapopulation structure in the planktonic diatom Ditylum<\/em> brightwellii<\/em> (Bacillariophyceae). Protist, 160: 111-121<\/a><\/p>\n\n\n\n

Bowler, C, AE Allen, JH Badger, J Grimwood, K Jabbari, A Kuo, U Maheswari, C Martens, F Maumus, RP Otillar, E Rayko, A Salamov, K Vandepoele, B Beszteri, A Gruber, M Heijde, M Katinka, T Mock, K Valentin, F V\u00e9rret, JA Berges, C Brownlee, J Cadoret, A Chiovitti, CJ Choi, S Coesel, A De Martino, JC Detter, C Durkin, A Falciatore, J Fournet, M Haruta, M Huysman, BD Jenkins, K Jiroutova, RE Jorgensen, Y Joubert, A Kaplan, N Kroeger, P Kroth, J La Roche, E Lindquist, M Lommer,V Martin-J\u00e9z\u00e9quel, PJ Lopez, S Lucas, M Mangogna, K McGinnis, LK. Medlin, A Montsant, M Oudot-Le Secq, C Napoli, M Obornik, J Petit, BM. Porcel, N Poulsen, M Robison, L Rychlewsk, TA Rynearson, J Schmutz, M Schnitzler Parker, H Shapiro, M Siaut, M Stanley, MJ Sussman, A Taylor, A Vardi, P von Dassow, W Vyverman, A Willis, LS Wyrwicz, DS Rokhsar, J Weissenbach, EV Armbrust, BR Green, Y Van de Peer, IV Grigoriev. (2008)  The Phaeodactylum genome reveals the dynamic nature and multi-lineage evolutionary history of diatom genomes. Nature, 455 (7216) DOI 10.1038\/nature07410<\/a><\/p>\n\n\n\n

Durbin, E., M. Casas, T.A. Rynearson, and D.C.Smith. (2008) Measurement of copepod predation on nauplii using qPCR of the cytochrome oxidase 1 gene. Marine Biology DOI 10.1007\/s00227-007-0843-5<\/a><\/p>\n\n\n\n

Armbrust, E.V., Rynearson, T.A. and Jenkins. (2006) Genomic insights into diatom evolution and metabolism. In<\/em> Genomics and Evolution of Microbial Eukaryotes, Eds. Katz, L.A. and Bhattacharya, D. 201-213<\/a><\/p>\n\n\n\n

Rynearson, T. A., J.A. Newton and E. V. Armbrust. (2006) Spring bloom development, genetic variation and population succession in the planktonic diatom Ditylum<\/em> brightwellii<\/em>. Limnology and Oceanography. 51: 1249-1261 <\/a><\/p>\n\n\n\n

Rynearson, T. A., and E. V. Armbrust. (2005) Maintenance of clonal diversity during a spring bloom of the centric diatom Ditylum<\/em> brightwellii.<\/em> Molecular Ecology 14:1631-1640<\/a><\/p>\n\n\n\n

Armbrust, E. V., J. A. Berges, C. Bowler, B. R. Green, D. Martinez, N. H. Putnam, S. G. Zhou, A. E. Allen, K. E. Apt, M. Bechner, M. A. Brzezinski, B. K. Chaal, A. Chiovitti, A. K. Davis, M. S. Demarest, J. C. Detter, T. Glavina, D. Goodstein, M. Z. Hadi, U. Hellsten, M. Hildebrand, B. D. Jenkins, J. Jurka, V. V. Kapitonov, N. Kroger, W. W. Y. Lau, T. W. Lane, F. W. Larimer, J. C. Lippmeier, S. Lucas, M. Medina, A. Montsant, M. Obornik, M. S. Parker, B. Palenik, G. J. Pazour, P. M. Richardson, T. A. Rynearson, M. A. Saito, D. C. Schwartz, K. Thamatrakoln, K. Valentin, A. Vardi, F. P. Wilkerson, and D. S. Rokhsar. (2004) The genome of the diatom Thalassiosira pseudonana<\/em>: Ecology, evolution and metabolism. Science 306: 79-86, 10.1126\/science.1101156<\/a><\/p>\n\n\n\n

Rynearson, T. A., and E. V. Armbrust. (2004) Genetic differentiation among populations of the planktonic marine diatom Ditylum<\/em> brightwellii<\/em>. Journal of Phycology 40: 34-43<\/a><\/p>\n\n\n\n

Smetacek, V., C. Klaas, S. Menden-Deuer, and T. A. Rynearson. (2002) Mesoscale distribution of dominant diatom species relative to the hydrographical field along the Antarctic Polar Front. Deep Sea Research II 49: 3835-3848<\/a><\/p>\n\n\n\n

Rynearson, T. A., and E. V. Armbrust. (2000) DNA fingerprinting reveals extensive genetic diversity in a field population of the centric diatom Ditylum<\/em> brightwellii<\/em>. Limnology and Oceanography 45: 1329-1340<\/a><\/p>\n\n\n\n

Crawford, R. M., F. Hinz, and T. A. Rynearson. (1997) Spatial and temporal distribution of assemblages of the diatom Corethron<\/em> criophilum<\/em> in the Polar Frontal region of the South Atlantic. Deep Sea Research II 44: 479-496<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

For a full list of publications, visit the Rynearson Google Scholar Page * graduate student co-author, ** undergraduate student co-author Samuels, T, TA Rynearson, and S Collins (2021) Surviving heatwaves: thermal experience predicts life and death in a Southern Ocean diatom. Frontiers in Marine Science 8, 9 *Anderson SI and TA Rynearson (2020) Variability approaching […]<\/p>\n","protected":false},"author":0,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"_acf_changed":false,"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-43","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/web.uri.edu\/rynearson-lab\/wp-json\/wp\/v2\/pages\/43","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/web.uri.edu\/rynearson-lab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/web.uri.edu\/rynearson-lab\/wp-json\/wp\/v2\/types\/page"}],"replies":[{"embeddable":true,"href":"https:\/\/web.uri.edu\/rynearson-lab\/wp-json\/wp\/v2\/comments?post=43"}],"version-history":[{"count":5,"href":"https:\/\/web.uri.edu\/rynearson-lab\/wp-json\/wp\/v2\/pages\/43\/revisions"}],"predecessor-version":[{"id":2668,"href":"https:\/\/web.uri.edu\/rynearson-lab\/wp-json\/wp\/v2\/pages\/43\/revisions\/2668"}],"wp:attachment":[{"href":"https:\/\/web.uri.edu\/rynearson-lab\/wp-json\/wp\/v2\/media?parent=43"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}